diff --git a/.gitignore b/.gitignore
index 4df4afc..1704cc2 100644
--- a/.gitignore
+++ b/.gitignore
@@ -55,3 +55,8 @@ tmp/
 
 # Exclude any other project directories that might be added
 # Keep only workspace-level files (.sh, .md)
+
+# Project directories (separate repos)
+autonomous-coding/
+claude-plugins/
+roa2web/
diff --git a/autonomous-coding b/autonomous-coding
deleted file mode 160000
index 1690a61..0000000
--- a/autonomous-coding
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit 1690a61a22facfbd2fcbe99eac46d4b459f123b1
diff --git a/claude-plugins b/claude-plugins
deleted file mode 160000
index 45e28e7..0000000
--- a/claude-plugins
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit 45e28e7e94a8e10e560bae8750774a8b12fe3470
diff --git a/roa2web b/roa2web
deleted file mode 160000
index 1366dbc..0000000
--- a/roa2web
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit 1366dbc11c796a68021b875b9e2c8c6c738ab2d5